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-- Welcome to the initial phase of Q Fever Base --

a Wikibase Cloud instance containing information about Coxiella burnetii

please feel free to edit and create without hesitation the more "mistakes" the more we can learn and get better

Publications and further information

Coxbase goes Wiki - creating sustainability for genomic Q Fever data (Conference Poster) available at https://doi.org/10.5281/zenodo.14073114

Coxbase: online platform for epidemiological surveillance available at https://coxbase.q-gaps.de/webapp/

NFDI4Microbiota Knowledge Graphs Query Platform available at http://nfdi4microbiota.pages.gitlab.zbmed.de/nfdi4microbiota_pages/services/sparql_query.html

Contribute to Q Fever Base KG

how to add an isolate:

1. create the new item > [[1]]

• "label" = insert the specific name of isolate
• "description" = copy and paste: "name of Coxiella burnetii isolate"
• "alias" = fill out if there is an alternative name the isolate is listed under
• click create

2. search for the just created item in the search bar

3. click "add statement" (bottom right at item page)

4. add properties as applicable e.g. "instance of" > bacterial isolate

5. check Special:ListProperties for existing Properties

Q(uery) Fever how to query Q Fever Base:

1. on the left overview click on > Query Service
2. insert query

Example Query "list of isolates located in Brazil"

copy and paste the following:

PREFIX wbt: <https://qfeverbase.wikibase.cloud/prop/direct/>
PREFIX wb: <https://qfeverbase.wikibase.cloud/entity/>

SELECT DISTINCT ?item ?itemLabel ?itemDescription
WHERE {
?item wbt:P1 wb:Q13; # select all instances of bacterial isolate
wbt:P8 wb:Q71 # located in Brazil

SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }}

Example Query "graph of isolates by country"

copy and paste the following:

PREFIX wbt: <https://qfeverbase.wikibase.cloud/prop/direct/>

PREFIX wb: <https://qfeverbase.wikibase.cloud/entity/>

SELECT DISTINCT ?item ?itemLabel ?itemDescription ?country ?countryLabel

WHERE {

?item wbt:P1 wb:Q13;  # select all instances of bacterial isolate

wbt:P8 ?country. # get the country

SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }}

License: CC BY